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Waleed Nasser and Balaji Santhanam and Edward Roshan Miranda and Anup Parikh and Kavina Juneja and Gregor Rot and Christopher Dinh and Rui Chen and Blaz Zupan and Gad Shaulsky and Adam Kuspa (2013) Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions. Current Biology, 23 (10). pp. 862-872.

James R Tollervey and Tomaz Curk and Boris Rogelj and Michael Briese and Matteo Cereda and Melis Kayikci and Julian Konig and Tibor Hortobágyi and Agnes L Nishimura and Vera Zupunski and Rickie Patani and Siddharthan Chandran and Gregor Rot and Blaz Zupan and Christopher E Shaw and Jernej Ule (2011) Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. Nature Neuroscience, 14 (4). pp. 452-458.

Tomaz Curk and Gregor Rot and Blaz Zupan (2011) SNPsyn: detection and exploration of SNP-SNP interactions. Nucleic Acids Res, 39 (Suppl ). W444-9.

Julian Konig and Kathi Zarnack and Gregor Rot and Tomaz Curk and Melis Kayikci and Blaz Zupan and Daniel J Turner and Nicholas M Luscombe and Jernej Ule (2011) iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution. Journal of Visualized Experiments, 50 . pii: 2638.

Zheng Wang and Melis Kayikci and Michael Briese and Kathi Zarnack and Nicholas M Luscombe and Gregor Rot and Blaz Zupan and Tomaz Curk and Jernej Ule (2010) iCLIP predicts the dual splicing effects of TIA-RNA interactions. PLoS Biology, 8 (10). e1000530.

Anup Parikh and Edward Roshan Miranda and Mariko Katoh-Kurasawa and Danny Fuller and Gregor Rot and Lan Zagar and Tomaz Curk and Richard Sucgang and Rui Chen and Blaz Zupan and William F Loomis and Adam Kuspa and Gad Shaulsky (2010) Conserved developmental transcriptomes in evolutionarily divergent species. Genome Biology, 11 . R35.

Julian Konig and Kathi Zarnack and Gregor Rot and Tomaz Curk and Melis Kayikci and Blaz Zupan and Daniel J Turner and Nicholas M Luscombe and Jernej Ule (2010) iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nature Structural & Molecular Biology, 17 . pp. 909-915.

Gregor Rot and Anup Parikh and Tomaz Curk and Adam Kuspa and Gad Shaulsky and Blaz Zupan (2009) dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface. BMC Bioinformatics, 10 . p. 265.

Gregor Rot (2008) Development of interactive web-based application for display and bioinformatic analysis of gene expression data. EngD thesis.