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James R Tollervey and Tomaz Curk and Boris Rogelj and Michael Briese and Matteo Cereda and Melis Kayikci and Julian Konig and Tibor Hortobágyi and Agnes L Nishimura and Vera Zupunski and Rickie Patani and Siddharthan Chandran and Gregor Rot and Blaz Zupan and Christopher E Shaw and Jernej Ule (2011) Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. Nature Neuroscience, 14 (4). pp. 452-458.
Tomaz Curk and Gregor Rot and Blaz Zupan (2011) SNPsyn: detection and exploration of SNP-SNP interactions. Nucleic Acids Res, 39 (Suppl ). W444-9.
Julian Konig and Kathi Zarnack and Gregor Rot and Tomaz Curk and Melis Kayikci and Blaz Zupan and Daniel J Turner and Nicholas M Luscombe and Jernej Ule (2011) iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution. Journal of Visualized Experiments, 50 . pii: 2638.
Stefania Crippa and Marco Cassano and Graziella Messina and Daniela Galli and Beatriz G. Galvez and Tomaz Curk and Claudia Altomare and Flavio Ronzoni and Jaan Toelen and Rik Gijsbers and Zeger Debyser and Stefan Janssens and Blaz Zupan and Antonio Zaza and Giulio Cossu and Maurilio Sampaolesi (2011) miR669a and miR669q prevent skeletal muscle differentiation in postnatal cardiac progenitors. J Cell Biol, 193 . pp. 1197-1212.
Zheng Wang and Melis Kayikci and Michael Briese and Kathi Zarnack and Nicholas M Luscombe and Gregor Rot and Blaz Zupan and Tomaz Curk and Jernej Ule (2010) iCLIP predicts the dual splicing effects of TIA-RNA interactions. PLoS Biology, 8 (10). e1000530.
Anup Parikh and Edward Roshan Miranda and Mariko Katoh-Kurasawa and Danny Fuller and Gregor Rot and Lan Zagar and Tomaz Curk and Richard Sucgang and Rui Chen and Blaz Zupan and William F Loomis and Adam Kuspa and Gad Shaulsky (2010) Conserved developmental transcriptomes in evolutionarily divergent species. Genome Biology, 11 . R35.
Marko Toplak and Tomaz Curk and Janez Demsar and Blaz Zupan (2010) Does replication groups scoring reduce false positive rate in SNP interaction discovery?. BMC Genomics, 11 . p. 58.
Mojca Mattiazzi and Tomaz Curk and Igor Krizaj and Blaz Zupan and Uros Petrovic (2010) Inference of the Molecular Mechanism of Action from Genetic Interaction and Gene Expression Data. OMICS A journal of Integrative Biology, 14 (4). pp. 357-367.
Julian Konig and Kathi Zarnack and Gregor Rot and Tomaz Curk and Melis Kayikci and Blaz Zupan and Daniel J Turner and Nicholas M Luscombe and Jernej Ule (2010) iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nature Structural & Molecular Biology, 17 . pp. 909-915.
Gregor Rot and Anup Parikh and Tomaz Curk and Adam Kuspa and Gad Shaulsky and Blaz Zupan (2009) dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface. BMC Bioinformatics, 10 . p. 265.
Rocio Benabentos and Shigenori Hirose and Richard Sucgang and Tomaz Curk and Mariko Katoh and Elizabeth A Ostrowski and Joan E Strassmann and David C Queller and Blaz Zupan and Gad Shaulsky and Adam Kuspa (2009) Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium. Current Biology, 19 (7). pp. 567-572.
Tomaz Curk and Uros Petrovic and Gad Shaulsky and Blaz Zupan (2009) Rule-based clustering for gene promoter structure discovery. Methods of Information in Medicine, 48 (3). pp. 229-235.
Petra Fey and Pascale Gaudet and Tomaz Curk and Blaz Zupan and Eric M Just and Siddhartha Basu and Sohel N Merchant and Yulia A Bushmanova and Gad Shaulsky and Warren A Kibbe and Rex L Chisholm (2009) dictyBase-a Dictyostelium bioinformatics resource update. Nucleic Acids Res, 37 (Suppl 1). D515-D519.
Tomaz Curk and Janez Demsar and Qikai Xu and Gregor Leban and Uros Petrovic and Ivan Bratko and Gad Shaulsky and Blaz Zupan (2005) Microarray data mining with visual programming. Bioinformatics, 21 (3). pp. 396-398.
Davor Sluga and Tomaz Curk and Uros Lotric and Blaz Zupan Heterogeneous computing architecture for fast detection of SNP-SNP interactions. BMC Bioinformatics, 15 . p. 216.