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Marinka Zitnik and Edward A Nam and Christopher Dinh and Adam Kuspa and Gad Shaulsky and Blaz Zupan (2015) Gene prioritization by compressive data fusion and chaining. PLoS Computational Biology, 11 (10). e1004552.

Edward Roshan Miranda and Olga Zhuchenko and Marko Toplak and Balaji Santhanam and Blaz Zupan and Adam Kuspa and Gad Shaulsky (2013) ABC transporters in Dictyostelium discoideum development. PLoS One, 8 (8). e70040.

Waleed Nasser and Balaji Santhanam and Edward Roshan Miranda and Anup Parikh and Kavina Juneja and Gregor Rot and Christopher Dinh and Rui Chen and Blaz Zupan and Gad Shaulsky and Adam Kuspa (2013) Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions. Current Biology, 23 (10). pp. 862-872.

Anup Parikh and Edward Roshan Miranda and Mariko Katoh-Kurasawa and Danny Fuller and Gregor Rot and Lan Zagar and Tomaz Curk and Richard Sucgang and Rui Chen and Blaz Zupan and William F Loomis and Adam Kuspa and Gad Shaulsky (2010) Conserved developmental transcriptomes in evolutionarily divergent species. Genome Biology, 11 . R35.

Anup Parikh and Eryong Huang and Christopher Dinh and Blaz Zupan and Adam Kuspa and Devika Subramanian and Gad Shaulsky (2010) New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data. BMC Bioinformatics, 11 . p. 163.

Gregor Rot and Anup Parikh and Tomaz Curk and Adam Kuspa and Gad Shaulsky and Blaz Zupan (2009) dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface. BMC Bioinformatics, 10 . p. 265.

Rocio Benabentos and Shigenori Hirose and Richard Sucgang and Tomaz Curk and Mariko Katoh and Elizabeth A Ostrowski and Joan E Strassmann and David C Queller and Blaz Zupan and Gad Shaulsky and Adam Kuspa (2009) Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium. Current Biology, 19 (7). pp. 567-572.

Nancy Van Driessche and Janez Demsar and Ezgi O Booth and Paul Hill and Peter Juvan and Blaz Zupan and Adam Kuspa and Gad Shaulsky (2005) Epistasis analysis with global transcriptional phenotypes. Nature Genetics, 37 (5). pp. 471-477.

Blaz Zupan and Janez Demšar and Ivan Bratko and Peter Juvan and John Halter and Adam Kuspa and Gad Shaulsky (2003) GenePath: a System for Automated Construction of Genetic Networks from Mutant Data. Bioinformatics, 19 (3). p. 383.

Peter Juvan and Blaz Zupan and Janez Demšar and Ivan Bratko and John A. Halter and Adam Kuspa and Gad Shaulsky (2001) Web-enabled knowledge-based analysis of genetic data. In: Second International Symposium on Medical Data Analysis, October 8-9, 2001, Madrid, Spain.